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Sudan's human rights record has been widely condemned. Some human rights organizations have documented a variety of abuses and atrocities carried out by the Sudanese government over the past several years under the rule of Omar al-Bashir. The 2009 Human Rights Report by the United States Department of State noted serious concerns over human rights violations by the government and militia groups. Capital punishment, including crucifixion, is used for many crimes. In September, 2019, the government of Sudan signed an agreement with the UN High Commissioner for Human Rights to open a UN Human Rights Office in Khartoum and field offices in Darfur, Blue Nile, Southern Kordofan and East Sudan. In July 2020, during the 2019–2021 Sudanese transition to democracy, Justice Minister Nasredeen Abdulbari stated that "all the laws violating the human rights in Sudan" were to be scrapped, and for this reason, Parliament passed a series of laws in early July 2020.

Abuses in conflict settings

Conflicts between the government and rebel groups—the civil wars involving north–south tensions, the Darfur conflict involving Arab tribespeople tensions in the Darfur region in the western region of Sudan—have resulted in rape, torture, killings, and massive population displacements (estimated at over 2 million in 2007).}

According to The Christian Science Monitor, on 25 March 2004:

<blockquote>The Darfur region war boils down to this: African tribes have long been at odds with Arab groups in the region over access to good land. Then, last year, two armed African groups began a rebellion against the Khartoum regime. The government responded by apparently giving military support to Arab militias. There are reports of Sudanese military planes bombing villages, after which Arab militias go in and rape and kill survivors.</blockquote>

Ethnic cleansing in Darfur

Mukesh Kapila, United Nations (UN) coordinator for Sudan, has described the conflict as a campaign of ethnic cleansing, because Black Arab militias have systematically massacred tribespeople in the Darfur region. According to Kapila, "The government has a close knowledge of what's going on - and it can influence the Arab militia." The UN has estimated that 300,000 civilians in the Darfur region were killed between 2003 and 2010.

Arbitrary detentions

On April 28, 2022, Human Rights Watch released a report, that documented detention of hundreds of illegal protesters by Sudanese security forces against the backdrop of expressing opinion in an attempt to instill fear in those opposed to military rule. The report revealed the security forces' violent practices against demonstrators of sexual assault and threats of rape. Moreover, the United Nations Human Rights Office in Sudan indicated that more than a thousand people were arrested within a few months, including 148 children.

Slavery

Some organizations, in particular Christian Solidarity Worldwide and related organizations, argue that enslavement exists in Sudan and is encouraged by the Sudanese government. As an example of such allegations, in The Wall Street Journal on 12 December 2001, Michael Rubin said:

<blockquote>...On 4 October, Sudanese Vice President Ali Uthman Taha declared, "The jihad is our way and we will not abandon it and will keep its banner high."</blockquote>

Between 23 and 26 October, Sudanese government troops attacked villages near the southern town of Aweil, killing 93 men and enslaving 85 women and children. Then, on 2 November, the Sudanese military attacked villages near the town of Nyamlell, carrying off another 113 women and children.

<blockquote>What's Sudanese slavery like? One 11-year-old Christian boy told me about his first days in captivity: "I was told to be a Muslim several times, and I refused, which is why they cut off my finger." Twelve-year-old Alokor Ngor Deng was taken as a slave in 1993. She has not seen her mother since the slave raiders sold the two to different masters. Thirteen-year-old Akon was seized by Sudanese military while in her village five years ago. She was gang-raped by six government soldiers, and witnessed seven executions before being sold to a Sudanese Arab.</blockquote>

<blockquote>Many freed slaves bore signs of beatings, burnings and other tortures. More than three-quarters of formerly enslaved women and girls reported rapes.</blockquote>

<blockquote>While nongovernmental organizations argue over how to end slavery, few deny the existence of the practice. Estimates of the number of blacks now enslaved in Sudan vary from tens of thousands to hundreds of thousands (not counting those sold as forced labor in Libya)</blockquote>

On the other hand, fraud in the name of "slave redemption" has been documented before.

Women's rights

Sudan is a developing nation that faces many challenges in regard to gender inequality. Freedom House gave Sudan the lowest possible ranking among repressive regimes during 2012. South Sudan received a slightly higher rating but it was also rated as "not free". In the 2013 report of 2012 data, Sudan ranks 171st out of 186 countries on the Human Development Index (HDI). Sudan also is one of very few countries that are not a signatory on the Convention on the Elimination of All Forms of Discrimination Against Women (CEDAW).

Despite all of this, there have been positive changes in regard to gender equality in Sudan. As of 2012, women embodied 24.1% of the National Assembly of Sudan. Sudanese women account for a larger percentage of the national parliament than many Westernized nations. Notwithstanding that, gender inequalities in Sudan, particularly as they pertain to female genital mutilation and the disparity of women to men in the labor market, have received attention in the international community.

Sudan signed the Protocol to the African Charter on Human and Peoples' Rights on the Rights of Women in Africa (Maputo Protocol) on 30 June 2008, but as of July 2020 has not ratified it yet.